These healthy pumpkin protein muffins are fluffy, moist, and full of cozy fall flavors with over 9 grams of protein each. Made with almond flour, Greek yogurt, and protein powder, they’re naturally gluten-free and easy to whip up in one bowl — perfect for a quick breakfast, snack, or meal prep in under 30 minutes.
Prep: Preheat the oven to 350°F and line a muffin tin with paper liners.
Mix wet ingredients: In a large bowl, whisk together the eggs, pumpkin purée, almond butter, and Greek yogurt until smooth. Add the milk, maple syrup, vanilla, and coconut sugar, and whisk again until fully combined.
Add dry ingredients: Add the almond flour, protein powder, pumpkin pie spice, cinnamon, and baking powder. Gently fold the dry ingredients into the wet until just combined — don’t overmix.
Add mix-ins: Stir in the chocolate chips or nuts, if using.
Fill muffin cups: Divide the batter evenly among the muffin cups, filling each about two-thirds full. Sprinkle extra chocolate chips on top if you’d like.
Bake: Bake for 18–20 minutes, or until a toothpick inserted in the center comes out clean.
Cool: Let the muffins cool completely in the pan before removing. This helps them set so they stay moist and fluffy instead of crumbly.
Notes
To Store: Place cooled muffins into an airtight container and store them at room temperature for 2 - 4 days or in the refrigerator for up to 5 days.Freezing: Freezing muffins is an excellent option if you like to meal prep. Simply let your muffins cool to room temperature and then place them in a freezer-safe, airtight bag. You can freeze them for up to 3 months! And when you are ready to enjoy them, just pop them into the microwave for 20 – 40 seconds until warm.Protein Powder: Experiment with different protein powder flavors to customize the taste of your muffins. Vanilla, pumpkin-spice, snickerdoodle, or even chocolate-flavored protein powder can add unique touches.Mini Muffins: Make mini muffins for bite-sized snacks or party treats; just adjust the baking time accordingly. Mini muffins should take 7 – 10 minutes to bake.Spiced Cream Cheese Filling: Create a surprise filling by mixing cream cheese with a touch of cinnamon and a sweetener, then add a dollop to the center of each muffin before baking.Almond Milk: can be substituted with oat milk, cashew milk, regular milk, or skim milk.Coconut Sugar: can be substituted with light brown sugar.Almond Butter: can be substituted with all-natural creamy peanut butter.Almond Flour: DO NOT substitute with coconut flour or almond meal.The ntritonal information below is calculated with Whey Protein Powder and sugar-free chocolate chips.